Man pages for LidaWangPSU/PUMICE
(Prediction Using Models Informed by Chromatin conformations and Epigenomics
| calc_R2 | Function for calculating coefficient of determination#' Read... |
| constant_process | Function for mapping snps to genes in 3D method (e.g. Domain,... |
| elnet | Cross-validation |
| elnet.cv | Nested Cross-validation |
| expression_scale | Function for scaling expression dataframe to mean of zero |
| file_helper | Function for splitting jobs |
| func_process | Function for mapping snps to genes in 3D method (e.g. Domain,... |
| geno_coord | Function for filling in snp coordinates |
| geno_fill | Function for filling in missing genotype |
| geno_scale | Function for scaling genotype dataframe to mean of zero and... |
| pchic_process | Function for mapping snps to genes in 3D method pchic |
| PUMICE.compute_weight | Create gene expression prediction model using window type and... |
| PUMICE.nested_cv | Run nested cross-validation to determine which window type... |
| read_plink_custom | Read plink file through R |
