PUMICE.compute_weight: Create gene expression prediction model using window type and...

In LidaWangPSU/PUMICE: (Prediction Using Models Informed by Chromatin conformations and Epigenomics

Create gene expression prediction model using window type and penalty factor derived from the CV step

Description

Create gene expression prediction model using window type and penalty factor derived from the CV step

Usage

PUMICE.compute_weight(
  geno_path,
  exp_path,
  encode_path,
  output_path,
  window_path_list
)

Arguments

geno_path	genotype path, plink format
exp_path	expression path, txt format
encode_path	epigenomic annotation path, txt format
output_path	dir of your output file
window_path_list	A list of 3d genomic winodows you need

Examples

PUMICE.compute_weight()

LidaWangPSU/PUMICE documentation built on Oct. 9, 2022, 3:57 p.m.