Man pages for LieberInstitute/jaffelab
Commonly used functions by the Jaffe lab

agePlotterAge plotter
cleaningYRegress out SVs or PCs
cornercorner, an improved head()
edge.pvalueFunction to compute empirical p-values
expression_cutoffFind expression cutoffs
getFGiven two nested models, calculate the F-statistics
getORCalculate the odds ratio
getPcaVarsCalculates the percent of variance explained for principal...
getR2Calculate R squared from a matrix
getTGet t-statistics from limma objects
granges_to_ucscConvert a GRanges object to UCSC coordinates
jaffelab-packageCommonly used functions by the Jaffe lab
junctionCountCount junctions
merge_rse_metricsMerge sample metadata across several columns
split0Splits into a list
ssWrapper for string split and sapply
ucsc_to_grangesConvert UCSC coordinates to a GRanges object
LieberInstitute/jaffelab documentation built on Nov. 16, 2018, 4:20 p.m.