Commonly used functions by the Jaffe lab

agePlotter | Age plotter |

cleaningY | Regress out SVs or PCs |

corner | corner, an improved head() |

edge.pvalue | Function to compute empirical p-values |

expression_cutoff | Find expression cutoffs |

getF | Given two nested models, calculate the F-statistics |

getOR | Calculate the odds ratio |

getPcaVars | Calculates the percent of variance explained for principal... |

getR2 | Calculate R squared from a matrix |

getT | Get t-statistics from limma objects |

granges_to_ucsc | Convert a GRanges object to UCSC coordinates |

jaffelab-package | Commonly used functions by the Jaffe lab |

junctionCount | Count junctions |

merge_rse_metrics | Merge sample metadata across several columns |

split0 | Splits into a list |

ss | Wrapper for string split and sapply |

ucsc_to_granges | Convert UCSC coordinates to a GRanges object |

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