LieberInstitute/recount.bwtool: Compute coverage matrices from recount quickly using bwtool
Compute coverage matrices from recount https://jhubiostatistics.shinyapps.io/recount/ using bwtool (https://github.com/CRG-Barcelona/bwtool). This makes it easy to explore regions beyond the genes and exons that are available in recount. For example, it can be used for annotation-agnostic differential expression analyses with the data from the recount project as described at http://www.nature.com/nbt/journal/v35/n4/full/nbt.3838.html. This package was used for computing expressed regions in the GTEx data as described in biorxiv.org/content/early/2017/06/03/145656.
Getting started
Browse package contents
Package details |
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| Bioconductor views | Coverage DataImport DifferentialExpression GeneExpression RNASeq Sequencing Software |
| Maintainer | |
| License | Artistic-2.0 |
| Version | 0.99.31 |
| URL | https://github.com/LieberInstitute/recount.bwtool |
| Package repository | View on GitHub |
| Installation |
Install the latest version of this package by entering the following in R:
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