Files in LieberInstitute/recount3
Explore and download data from the recount3 project
.Rbuildignore
.github/.gitignore
.github/CODE_OF_CONDUCT.md
.github/CONTRIBUTING.md
.github/ISSUE_TEMPLATE/feature_request_template.md
.github/ISSUE_TEMPLATE/issue_template.md
.github/SUPPORT.md
.github/workflows/check-bioc.yml
.gitignore
DESCRIPTION
NAMESPACE
NEWS.md
R/annotation_ext.R
R/annotation_options.R
R/available_projects.R
R/create_hub.R
R/create_rse.R
R/create_rse_manual.R
R/expand_sra_attributes.R
R/file_retrieve.R
R/locate_url.R
R/locate_url_ann.R
R/project_homes.R
R/read_counts.R
R/read_metadata.R
R/recount3-package.R
R/recount3_cache.R
R/recount3_cache_files.R
R/recount3_cache_rm.R
R/transform_counts.R
README.Rmd
README.md
_pkgdown.yml
codecov.yml
dev/01_create_pkg.R
dev/02_git_github_setup.R
dev/03_core_files.R
dev/04_update.R
dev/05_setup_tests.R
inst/CITATION
inst/scripts/make-data_project_info.R
inst/scripts/make-metadata_project_info.R
inst/scripts/make_data_project_info.txt
inst/scripts/make_metadata_project_info.txt
inst/test_files/9f5117afed21_sra.exon_sums.DRP002835.ERCC.gz
inst/test_files/9f51224769fb_sra.recount_seq_qc.DRP002835.MD.gz
inst/test_files/9f513c614baf_human.exon_sums.ERCC.gtf.gz
inst/test_files/9f513f91efb8_human.gene_sums.ERCC.gtf.gz
inst/test_files/9f51506ef1f_sra.recount_project.DRP002835.MD.gz
inst/test_files/9f5155b3a4c6_sra.sra.DRP002835.MD.gz
inst/test_files/9f5161139a3_sra.gene_sums.DRP002835.ERCC.gz
inst/test_files/9f517e7eef51_sra.recount_pred.DRP002835.MD.gz
inst/test_files/9f51a3cdecd_sra.recount_qc.DRP002835.MD.gz
inst/test_files/BiocFileCache.sqlite
man/annotation_ext.Rd
man/annotation_options.Rd
man/available_projects.Rd
man/available_samples.Rd
man/compute_read_counts.Rd
man/compute_scale_factors.Rd
man/create_hub.Rd
man/create_rse.Rd
man/create_rse_manual.Rd
man/expand_sra_attributes.Rd
man/figures/logo.png
man/file_retrieve.Rd
man/is_paired_end.Rd
man/locate_url.Rd
man/locate_url_ann.Rd
man/project_homes.Rd
man/read_counts.Rd
man/read_metadata.Rd
man/recount3-package.Rd
man/recount3_cache.Rd
man/recount3_cache_files.Rd
man/recount3_cache_rm.Rd
man/transform_counts.Rd
pkgdown/extra.css
tests/testthat.R
tests/testthat/test-annotation_ext.R
tests/testthat/test-annotation_options.R
tests/testthat/test-available_projects.R
tests/testthat/test-citation.R
tests/testthat/test-create_hub.R
tests/testthat/test-create_rse.R
tests/testthat/test-create_rse_manual.R
tests/testthat/test-file_retrieve.R
tests/testthat/test-locate_url.R
tests/testthat/test-locate_url_ann.R
tests/testthat/test-project_homes.R
tests/testthat/test-read_counts.R
tests/testthat/test-read_metadata.R
tests/testthat/test-recount3_cache.R
tests/testthat/test-recount3_cache_files.R
tests/testthat/test-recount3_cache_rm.R
tests/testthat/test-transform_counts.R
vignettes/.gitignore
vignettes/recount3-quickstart.Rmd
