Files in LieberInstitute/recount3

Explore and download data from the recount3 project

.Rbuildignore

.github/.gitignore

.github/CODE_OF_CONDUCT.md .github/CONTRIBUTING.md .github/ISSUE_TEMPLATE/feature_request_template.md .github/ISSUE_TEMPLATE/issue_template.md .github/SUPPORT.md

.github/workflows/check-bioc.yml

.gitignore

DESCRIPTION

NAMESPACE

NEWS.md R/annotation_ext.R R/annotation_options.R R/available_projects.R R/create_hub.R R/create_rse.R R/create_rse_manual.R R/expand_sra_attributes.R R/file_retrieve.R R/locate_url.R R/locate_url_ann.R R/project_homes.R R/read_counts.R R/read_metadata.R R/recount3-package.R R/recount3_cache.R R/recount3_cache_files.R R/recount3_cache_rm.R R/transform_counts.R README.Rmd README.md

_pkgdown.yml

codecov.yml

dev/01_create_pkg.R dev/02_git_github_setup.R dev/03_core_files.R dev/04_update.R dev/05_setup_tests.R

inst/CITATION

inst/scripts/make-data_project_info.R inst/scripts/make-metadata_project_info.R

inst/scripts/make_data_project_info.txt

inst/scripts/make_metadata_project_info.txt

inst/test_files/9f5117afed21_sra.exon_sums.DRP002835.ERCC.gz

inst/test_files/9f51224769fb_sra.recount_seq_qc.DRP002835.MD.gz

inst/test_files/9f513c614baf_human.exon_sums.ERCC.gtf.gz

inst/test_files/9f513f91efb8_human.gene_sums.ERCC.gtf.gz

inst/test_files/9f51506ef1f_sra.recount_project.DRP002835.MD.gz

inst/test_files/9f5155b3a4c6_sra.sra.DRP002835.MD.gz

inst/test_files/9f5161139a3_sra.gene_sums.DRP002835.ERCC.gz

inst/test_files/9f517e7eef51_sra.recount_pred.DRP002835.MD.gz

inst/test_files/9f51a3cdecd_sra.recount_qc.DRP002835.MD.gz

inst/test_files/BiocFileCache.sqlite

man/annotation_ext.Rd man/annotation_options.Rd man/available_projects.Rd man/available_samples.Rd man/compute_read_counts.Rd man/compute_scale_factors.Rd man/create_hub.Rd man/create_rse.Rd man/create_rse_manual.Rd man/expand_sra_attributes.Rd

man/figures/logo.png

man/file_retrieve.Rd man/is_paired_end.Rd man/locate_url.Rd man/locate_url_ann.Rd man/project_homes.Rd man/read_counts.Rd man/read_metadata.Rd man/recount3-package.Rd man/recount3_cache.Rd man/recount3_cache_files.Rd man/recount3_cache_rm.Rd man/transform_counts.Rd

pkgdown/extra.css

tests/testthat.R tests/testthat/test-annotation_ext.R tests/testthat/test-annotation_options.R tests/testthat/test-available_projects.R tests/testthat/test-citation.R tests/testthat/test-create_hub.R tests/testthat/test-create_rse.R tests/testthat/test-create_rse_manual.R tests/testthat/test-file_retrieve.R tests/testthat/test-locate_url.R tests/testthat/test-locate_url_ann.R tests/testthat/test-project_homes.R tests/testthat/test-read_counts.R tests/testthat/test-read_metadata.R tests/testthat/test-recount3_cache.R tests/testthat/test-recount3_cache_files.R tests/testthat/test-recount3_cache_rm.R tests/testthat/test-transform_counts.R

vignettes/.gitignore

vignettes/recount3-quickstart.Rmd

LieberInstitute/recount3 documentation built on May 10, 2023, 6:01 a.m.