Man pages for LieberInstitute/recount3
Explore and download data from the recount3 project
| annotation_ext | Obtain the file extension for a given organism and annotation |
| annotation_options | List available annotation options for a given organism |
| available_projects | List available projects in recount3 |
| available_samples | List available samples in recount3 |
| compute_read_counts | Compute read counts |
| compute_scale_factors | Compute count scaling factors |
| create_hub | Create UCSC track hub for BigWig files |
| create_rse | Create a recount3 RangedSummarizedExperiment gene or exon... |
| create_rse_manual | Internal function for creating a recount3... |
| expand_sra_attributes | Expand SRA attributes |
| file_retrieve | Download a remote file and cache it to re-use later |
| is_paired_end | Guess whether the samples are paired end |
| locate_url | Construct the URL to access a particular 'recount3' file |
| locate_url_ann | Construct the URL to a recount3 annotation file |
| project_homes | Find available project home options |
| read_counts | Read a counts file |
| read_metadata | Read the metadata files |
| recount3_cache | Specify where to cache the recount3 files |
| recount3_cache_files | Locate recount3 cached files |
| recount3_cache_rm | Remove recount3 cached files |
| recount3-package | recount3: Explore and download data from the recount3 project |
| transform_counts | Transform the raw counts provided by the recount3 project |
