getR2: getR2
In LingsongMeng/GuidedSparseKmeans: Guided Sparse K-means

Description Usage Arguments Details Value Author(s)

View source: R/getR2.R

Get R-squared or pseudo R-squared

1	getR2(x, z, model)

`x`	Gene expression matrix, n*p (rows for subjects and columns for genes).
`z`	One phenotypic variable from clinical dataset, a vector.
`model`	The model fitted to obtain R2, please select model from 'linear', 'logit', 'exp', 'polr','cox'.

Obtain R-squared or pseudo R-squared between phenotypic variable and expression value of each gene, which will be used in GuidedSparseKmeans.R2out function.

A vector

R2.per

R-squared or pseudo R-squared between phenotypic variable and expression value of each gene, a vector.

Lingsong Meng

LingsongMeng/GuidedSparseKmeans documentation built on May 11, 2020, 12:29 a.m.