GeneLab_Search: GeneLab_Search: Programmatic interface for GeneLab's public...
In Liu-Zhichao/nasaR: Interface to Various NASA APIs

Description Usage Arguments Value Examples

GeneLab provides a RESTful Application Programming Interface (API) to its full-text search capability, which provides the same functionality available through the GeneLab public data repository website. The API provides a choice of standardized web output formats, such as JavaScript Object Notation (JSON) or Hyper Text Markup Language (HTML), of the search results. The GeneLab Search API can also federate with other heterogeneous external bioinformatics databases, such as the National Institutes of Health (NIH) / National Center for Biotechnology Information's (NCBI) Gene Expression Omnibus (GEO); the European Bioinformatics Institute's (EBI) Proteomics Identification (PRIDE); the Argonne National Laboratory's (ANL) Metagenomics Rapid Annotations using Subsystems Technology (MG-RAST).

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GeneLab_Search(key = Sys.getenv("NASA_TOKEN"), term = "",
  type = "cgene", from = 0, size = 25, order = "DESC", ffield,
  fvalue)

`key`	String. Your NASA API key, you can enter your key in the function parameter, but it's not recommended. Instead, you'd better save your key in R environment and call it "NASA_TOKEN". Then the function would automatically acquire your key info.
`term`	String (optional multiple values). Keyword(s) to search on along with optional case-insensitive boolean operators, such as: AND, OR, NOT (Note: Default search is a boolean "AND" for all keyword searches). Query all GeneLab data sets as default.
`type`	String (multiple valid values: cgene, nih_geo_gse, ebi_pride, mg_rast). Specific database(s) to query on (e.g., values available cgene=GeneLab, nih_geo_gse=NIH GEO, ebi_pride=EBI PRIDE, or mg_rast=MG-RAST database with optional multiple values separated by comma delimiter). "cgene" (GeneLab database) as default.
`from`	Integer. Search result sets pagination start page. 0 as default.
`size`	Integer. Search result sets display count. 25 as default.
`order`	String. Sort order (e.g., either "ASC" for ascending or "DESC" for descending). "DESC" as default.
`ffield`	String. Search filter field is only for GeneLab database (cgene) at this time. Other databases will be included at a later time. (should always be paired with fvalue parameter).
`fvalue`	String. Search filter value is only for GeneLab database (cgene) at this time. Other databases will be included at a later time. (should always be paired with ffield parameter).

Data from GeneLab website.

1 2	GeneLab_Search(term = "space", ffield = "links", fvalue = "GPL16417", type = "cgene,nih_geo_gse") GeneLab_Search(ffield = "Accession", fvalue = "GSE82255")