API for LiuzLab/TraceQC
Quality Control of CRISPR Lineage Tracing Seqence Data

Global functions
TraceQC	Man page
build_binary_table	Man page
circular_chordgram	Source code
circular_histogram	Source code
create_TraceQC_object	Man page
create_obj_list	Man page
example_obj	Man page
example_obj_list	Man page
fastqc.file	Man page
filter_mutations	Source code
filter_mutations_per_UMI	Source code
filter_mutations_per_cell	Source code
find_position	Source code
format_mutation_df	Source code
generate_qc_report	Man page
generate_qc_report_from_obj	Man page
get_UMI_count_per_CB	Source code
get_abspath	Source code
get_qcpath	Man page
get_read_count_per_UB	Source code
install_external_packages	Man page
mutation_type	Man page
mutation_type_donut	Source code
num_mutation_histogram	Source code
parse_ref_file	Source code
plot_alignment_permutation	Source code
plot_construct	Source code
plot_deletion_hotspot	Source code
plot_insertion_hotspot	Source code
plot_lorenz_curve	Source code
plot_mutation_pattern_lineplot	Man page
plot_mutation_pattern_violinplot	Man page
plot_phylogenetic_tree	Man page
plot_point_mutation_hotspot	Man page
plot_point_substitution_hotspot	Source code
plot_score_distribution	Source code
seq_split	Source code
seq_to_character	Source code
sequence_alignment	Source code
sequence_alignment_for_10x	Source code
sequence_permutation	Source code
sequnce_alignment_threshold	Man page
table_to_phyDat	Man page