build_binary_table: Convert A TraceQC object to a matrix
In LiuzLab/TraceQC: Quality Control of CRISPR Lineage Tracing Seqence Data
build_binary_table R Documentation
Convert A TraceQC object to a matrix
Description
Convert A TraceQC object to a matrix
Usage
build_binary_table(TraceQC_input, count_cutoff = 5)
Arguments
TraceQC_input
A TraceQC object
count_cutoff
The barcode cutoff. The function only considers barcodes
whose raw counts are equal or greater than the cutoff.
Value
It returns a list that contains a character matrix, a sequence
information of each barcode, and a data frame that contains code of each
barcode sequence.
LiuzLab/TraceQC documentation built on April 19, 2022, 1:29 p.m.
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| build_binary_table | R Documentation |
Convert A TraceQC object to a matrix
Description
Convert A TraceQC object to a matrix
Usage
build_binary_table(TraceQC_input, count_cutoff = 5)
Arguments
TraceQC_input |
A TraceQC object |
count_cutoff |
The barcode cutoff. The function only considers barcodes whose raw counts are equal or greater than the cutoff. |
Value
It returns a list that contains a character matrix, a sequence information of each barcode, and a data frame that contains code of each barcode sequence.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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