fastqc.file: Running FASTQC for a file.

In LiuzLab/TraceQC: Quality Control of CRISPR Lineage Tracing Seqence Data

Running FASTQC for a file.

Description

Running FASTQC for a file.

Usage

fastqc.file(input_file, threads = 4)

Arguments

input_file	A FASTQ file path
threads	The number of threads will be used in FASTQC

Value

It returns a path to the QC file.

Examples

input_file <- system.file("extdata", "test_data",
                          "fastq", "example.fastq.gz", package="TraceQC")
fastqc.file(input_file)

LiuzLab/TraceQC documentation built on April 19, 2022, 1:29 p.m.