API for LobsterScience/bio.lobster
Lobster Stock Assessment Tools for DFO Maritimes
| Global functions | |
|---|---|
| .calcOrientation | Source code |
| ASMFC_triggers | Source code |
| BarPlotCLF | Source code |
| BarPlotCLF2 | Source code |
| BubblePlotCLF | Source code |
| CAplots | Source code |
| CAplotsMultDataSets | Source code |
| CLF | Source code |
| CPUEModelData | Source code Source code |
| CPUEModelData2 | Source code |
| CPUEModelPlot | Source code |
| CPUEgam | Man page Source code |
| CPUEmodel | Source code |
| CPUEplot | Source code |
| CarapaceLengthFrequencies | Source code |
| CatchRatePlot | Source code |
| ContLegend | Source code |
| ExploitationRatePlots | Source code |
| FSRSCatchRatePlot | Source code |
| FSRSModelData | Source code |
| FSRSclf | Source code |
| FSRSmodel | Source code |
| FSRSmodel.3dplot | Source code |
| FadjSeason | Source code |
| Fecundity | Source code |
| FisheryPlot | Source code |
| GroundfishSurveyProcess | Source code |
| ILTS_ITQ_All_Data | Man page Source code |
| ILTS_ITQ_sets | Source code |
| IndicatorplotsMultDataSets | Source code |
| LAFSS | Source code |
| LandAbundPlot | Source code |
| LandPlot | Source code |
| Lobster.Bycatch | Source code |
| LobsterLogsProcess | Man page Source code |
| LobsterMap | Man page Source code |
| LobsterOffshoregrid | Source code |
| LobsterSurveyProcess | Man page Source code |
| N2P | Source code |
| NEFSC_sets | Source code |
| Ncolor | Source code |
| PortSamplesProcess | Source code |
| PortSummary | Source code |
| RLibrary | Source code |
| RV_sets | Source code |
| RV_sets41 | Source code |
| RV_sets_modelledProps | Source code |
| RV_survey_from_ESE | Source code |
| Relief.plots | Source code |
| ReliefPlots | Source code |
| ScallopSurveyProcess | Source code |
| SoMLeBris | Source code |
| SoMplot | Source code |
| SpatialGamLobsterSurvey | Source code |
| SurveyTowData | Source code |
| TempModel | Source code |
| TempModelData | Source code |
| TempModelPlot | Source code |
| TempModelPredict | Source code |
| abundanceDistributionPlot | Man page Source code |
| addSYEAR | Source code |
| age.back | Source code |
| annualTimeCircle | Source code |
| areacal | Source code |
| array_map | Source code |
| assignArea | Source code |
| assignDepth | Source code |
| assignStation | Source code |
| assignSubArea2733 | Source code |
| atSeaIndicatorPlots | Source code |
| atSeaLandingsLinker | Source code |
| atSeaWeightings | Source code |
| backFillSeasonDates | Source code |
| biasCorrCPUE | Source code |
| binomialPredict | Source code |
| biomass.logistic.recursion | Source code |
| biomass.plt | Source code |
| biomassPlot | Source code |
| blank.bank | Source code |
| blockedBootstrap | Source code |
| bnamR | Man page Source code |
| buildDatObj | Source code |
| bycatch.db | Source code |
| calcAreaSwept | Man page Source code |
| calcIndexStations | Source code |
| clipboard | Source code |
| clusterStatistics | Source code |
| cohortAnalysis | Source code |
| collapse_list | Source code |
| collectorTemperatureData | Source code |
| compareCLF | Source code |
| compileAbundPresAbs | Source code |
| compileAbundPresAbs_vessel_corr | Source code |
| compileODF | Source code |
| constructCatchComp | Source code |
| contour.gen | Source code |
| convert.dd.dddd | Man page Source code |
| createBathyLines | Source code |
| create_seq_from_column | Source code |
| cv_SpaceTimeFolds | Source code |
| db.setup | Man page Source code |
| decision | Source code |
| delayBUGS | Source code |
| deluryLeslie | Source code |
| deprecated_ScallopSurveyProcess | Source code |
| depricated_calcAreaSwept | Man page Source code |
| derivs | Source code |
| dfo.rv.analysis | Man page Source code |
| dfo.rv.analysis_No_Conversions | Man page Source code |
| dfo.rv.jonah.analysis | Man page Source code |
| dfo.rv.other.analysis | Man page Source code |
| diag.plt | Source code |
| dicusum | Man page Source code |
| dstudent | Source code |
| esonar2netmind | Source code |
| exploit.plt | Source code |
| exploitPlot | Source code |
| figure.bugs | Source code |
| figure.habitat.associations | Source code |
| figure.stratified.analysis | Source code |
| fillNA | Source code |
| fillSubstrate | Source code |
| fillSubstrate_vh | Source code |
| fillup | Source code |
| fillupTS | Source code |
| find.bio.gis | Source code |
| findValue | Man page Source code |
| findingCL | Source code |
| fisheryFootprint | Source code |
| fishing.season | Source code |
| fit.plt | Source code |
| fitPlot | Source code |
| fixSensorLatLon | Man page Source code |
| gamDevExp_vars | Source code |
| gamTimeTrends | Source code |
| genran | Source code |
| getBerried | Man page Source code |
| getDegreeDays | Source code |
| getFccir | Source code |
| getFvec | Source code |
| getG | Source code |
| getGridVar | Source code |
| getGridVar2 | Source code |
| getGroMat | Man page Source code |
| getIncr | Man page Source code |
| getM | Source code |
| getSeason | Source code |
| getSimList | Source code |
| getTransMatrix | Source code |
| get_response | Source code |
| get_smooth_terms | Source code |
| ggLobsterMap | Source code |
| giniFootprint | Man page Source code |
| glmCIs | Man page Source code |
| grid.data | Source code |
| gridTrends | Source code |
| groundfish.analysis | Source code |
| groundfish.db | Man page Source code |
| habitat.model.data | Source code |
| hcrPlot | Source code |
| identifyPoints | Source code |
| image.prep | Source code |
| indicatorAttributesMatrixPlot | Source code |
| interpolation | Source code |
| jackknife | Source code |
| ksmooth.gcv | Source code |
| kurtosis | Source code |
| la | Man page Source code |
| legal | Source code |
| lengthOfSeason | Source code |
| ll_binomial | Source code |
| ll_gamma | Source code |
| ll_gaussian | Source code |
| ll_lognormal | Source code |
| ll_nbinom1 | Source code |
| ll_nbinom2 | Source code |
| ll_sdmTMB | Source code |
| ll_student | Source code |
| ll_tweedie | Source code |
| load.environment | Source code |
| lobGridPlot | Source code |
| lobIBM | Source code |
| lobLFAAttr | Source code |
| lobLW | Source code |
| lobSortedOrdination | Source code |
| lobster.db | Man page Source code Source code |
| lobsterEquilProduction | Source code |
| loess.gcv | Source code |
| log_sum_exp | Source code |
| lvb | Source code |
| mae | Source code |
| makePBS | Man page Source code |
| mavg | Source code |
| meansize.crude | Source code |
| meansize.direct | Source code |
| merge_lists | Source code |
| mls2fsrs | Source code |
| moltModel | Source code |
| moltModelPlot | Source code |
| movingBootstrap | Source code |
| nefsc.analysis | Man page Source code |
| nefsc.analysis_vh | Source code |
| nefsc.db | Man page Source code |
| offFishingYear | Source code |
| pMat | Source code |
| pPrMolt | Man page Source code |
| parse_smoothers | Source code |
| pbs.2.gis | Source code |
| pbs_2_gis | Source code |
| pcaAnalyseData | Source code |
| pdf2png | Source code |
| peR | Source code |
| plot.dicusum | Man page Source code |
| plot.freq.distribution.prior.posterior | Source code |
| plotSurveyIndex | Source code |
| plot_smooth_sdmtmb | Man page Source code |
| postPlot | Source code |
| post_plt | Source code |
| predGrow | Man page Source code |
| predMolt | Man page Source code |
| project.datadirectory | Source code |
| project.figuredirectory | Source code |
| projections | Source code |
| pseudoR2nls | Source code |
| rDailyTemps | Source code |
| rbindFill | Source code |
| readGearSuccessRaw | Source code |
| recruitment.trap.db | Source code |
| replacementRatio.relF | Source code |
| rescale0_1 | Source code |
| rmed | Source code |
| rmse | Source code |
| robust.regression.r2 | Source code |
| scallopSurveyIndex | Source code Source code |
| scallop_sets | Source code |
| sdmTMB_cv_nomesh | Source code |
| sdmTMBcv_tntpreds | Source code |
| setupDepletionData | Source code |
| sf_chull | Man page Source code |
| simBubPlot | Source code |
| simMolt | Man page Source code |
| simSummary | Source code |
| simpleHabitatDescription | Source code |
| skewness | Source code |
| smooth.bank | Source code |
| snowcrab_sets | Source code |
| spatial_parameters | Source code |
| stdts.plt | Source code |
| stdtsPlot | Source code |
| stochasticReferencePoints | Source code |
| stripDLLs | Man page Source code Source code |
| suitabilityIndices | Source code |
| surveyBubbles | Source code |
| surveyEfficPlot | Man page Source code |
| surveyHistMap | Source code |
| theme_test_adam | Source code |
| thinMatrix | Source code |
| tick.def | Source code |
| trace.plt | Source code |
| tracePlot | Source code |
| transitionLobster | Source code |
| uploadClickTouch | Source code |
| uploadOlexData | Source code |
| uploadSensors | Source code |
| uploadTempData | Source code |
| waa.plt | Source code |
| waaPlot | Source code |
| weightedCLF | Source code |
| write.dat | Source code |
| writeDat | Source code |
| zero.na | Source code |
