API for LouisKwok-PICB/motifscanr
Tools for Scanning TF motif on DNA regions
| Global functions | |
|---|---|
| .onAttach | Source code |
| .onUnload | Source code |
| check_bg | Source code |
| convert_pwm | Source code |
| convert_pwms | Source code |
| distance2nearestTss | Source code |
| generateControl | Man page |
| generateControl,GenomicRanges-method | Man page |
| generate_control_regions_helper | Source code |
| get.locfile | Source code |
| getJasparMotifs | Man page Source code |
| get_bg | Source code |
| get_motif_ix | Source code |
| get_motif_ix_plus | Source code |
| get_motif_positions | Source code |
| is.wholenumber | Source code |
| motifEnrichment | Man page |
| motifEnrichment,RangedSummarizedExperiment,RangedSummarizedExper | Man page |
| motifScan | Man page |
| motifScan,PFMatrix,ANY-method | Man page |
| motifScan,PFMatrixList,ANY-method | Man page |
| motifScan,PWMatrix,ANY-method | Man page |
| motifScan,PWMatrixList,BSgenomeViews-method | Man page |
| motifScan,PWMatrixList,DNAString-method | Man page |
| motifScan,PWMatrixList,DNAStringSet-method | Man page |
| motifScan,PWMatrixList,GenomicRanges-method | Man page |
| motifScan,PWMatrixList,RangedSummarizedExperiment-method | Man page |
| motifScan,PWMatrixList,character-method | Man page |
| motifScan_helper | Source code |
| motif_enrichment_helper | Source code |
| motif_score | Source code |
| motifs_cutoff | Source code |
| motifscanR | Man page |
| path.connect | Source code |
| pick_motif_max | Source code |
| pwmType | Man page Source code |
| randomStartFromGene | Source code |
| random_genome | Source code |
| scan_motif | Source code |
| scan_pwm | Source code |
| scan_pwm_by_strand | Source code |
| sliding_motif_score | Source code |
