calculDiversity: Calucul barcodes diversity

In Louisahadj/CellDestiny: A RShiny application for the visualization and analysis of single cell lineage-tracing data

Calucul barcodes diversity

Description

Calucul barcodes diversity

Usage

CalculDiversity(
  matrix,
  metadata,
  indivVar,
  indivVal,
  listVar,
  listVal,
  colorVar = "",
  diversity = "Number of barcodes"
)

Arguments

matrix,	a matrix
metadata,	the metadata
indivVar,	individuals variable name
indivVal,	individuals value names
listVar,	a list of varaibles
listVal,	a list of values
colorVar	, the color variable
diversity,	diversity index, default is "Number of barcodes". Others are "Simpson Index" or "Shannon Index"

Value

a matrix with diversity values

Louisahadj/CellDestiny documentation built on April 5, 2022, 12:02 a.m.