adjl_to_G_grouped: adjl_to_G_grouped

In LucaAnholt/PanViz: Integrating Multi-Omic Network Data With Summay-Level GWAS Data

adjl_to_G_grouped

Description

Internal function that constructs either a variable-coloured or uncoloured IMON (Integrated Multi-Omic Network) for an inputted adjacency list containing adjacency information between KEGG genes and queried SNPs.

Usage

adjl_to_G_grouped(
  adjl_G_S,
  unique_group_names,
  unique_group_cols,
  group_snps,
  colour_groups,
  ego,
  progress_bar
)

Arguments

adjl_G_S	- adjacency list containing relevant adjacencies between inputted SNPs and genes from KEGG
unique_group_names	- a list of the unique group/variable names in the provided GWAS Catalog association file
unique_group_cols	- a list of unique colours for each unique group/variable in the provided GWAS Catalog association file
group_snps	- a recursive list containing the lists of SNPs belonging to each unique group/variable in the provided GWAS Catalog association file
colour_groups	- boolean: whether or not user has chosen to colour the network by the unique group/variables in the provided GWAS Catalog association file
ego	- the egocentric order (centred around the SNPs in the network) in which to build the network i.e. pathlength from SNPs downwards towards the metabolome
progress_bar	- boolean: whether or not user has decided to have a progress bar print to the console

Value

- an igraph object containing the IMON

LucaAnholt/PanViz documentation built on April 17, 2022, 7:28 a.m.