grada_analyze_positions: GRADA - Analyze Positions
In LucasFVoges/GRADA: NGS data sequence (adapter) analyser

Description Usage Arguments Value

View source: R/grada_functions.R

This function will count the 1. positions of the sequences found in grada_table. Therefore grada_table needs to be run prior. It will only search for mismatches = 0.

grada_analyze_positions(
  PE = TRUE,
  readlength = 150,
  input = "temp/",
  numCores = detectCores()/2
)

`PE`	paired data? TRUE / FALSE (std. TRUE)
`readlength`	longest read! for X-axis. (std. 150)
`input`	input folder where the "grada_table.txt" is (output from grada_table())
`numCores`	Number of cores to use. If numCores=1 then the normal lapply function is used and the parallel package is not neccessary! (std. detectCores()/2)