grada_plot_bar: GRADA - Barplot

In LucasFVoges/GRADA: NGS data sequence (adapter) analyser

Description

This function will plot the results of grada_analyze_positions(). The results are stored in "Adapter_Positions.Rdata"

Usage

grada_plot_bar(
  PE = TRUE,
  input = "temp/",
  skip = TRUE,
  plot_row = 2,
  plot_col = 2
)

Arguments

PE	paired data? TRUE / FALSE (std. TRUE)
input	input folder where the "dapter_Positions.Rdata" is (output from grada_table() std. "temp/")
skip	if TRUE, it will skip plots for empty Data (if adapter is not found) so you will not get empty plots (sometimes it happens that the first plost is present anyway. this is due to a matrix R-command). (std. TRUE)
plot_row	is the par(mfrow=c(plot_row,plot_col)) for arrenging the plots (std. 2)
plot_col	is the par(mfrow=c(plot_row,plot_col)) for arrenging the plots (std. 2)

Details

The first position of the found Sequence will be plottet! If the read is 100 bases long and the adapter 10, the maximal position will therefor be 91!

plots will be skipped if no adapters are found. If there are any difficulties with this function, may set skip to FALSE.

Value

R barplots of the adapter positions.

LucasFVoges/GRADA documentation built on Feb. 16, 2021, 11:38 a.m.