lengthFrequencyPlot: Given a frequency table size, it generates a vertical array...

In LuisLauM/ruisu: Tools for habitual tasks (and another fancy things)

Given a frequency table size, it generates a vertical array of graphics for each specified category (months, latitudes, years, etc.).

Description

Given a frequency table size, it generates a vertical array of graphics for each specified category (months, latitudes, years, etc.).

Usage

lengthFrequencyPlot(
  file1,
  file2 = NULL,
  dataFactor = 1,
  newPlot = FALSE,
  profile = NULL,
  xlim = NULL,
  xInterval = 1,
  ylim = c(0, 50),
  yInterval = NULL,
  ylimList = NULL,
  yIntervalList = NULL,
  ltys1 = "solid",
  lwds1 = "1",
  col1 = "black",
  alpha1 = 1,
  ltys2 = "solid",
  lwds2 = "1",
  col2 = "blue",
  alpha2 = 1,
  juvLimit = NULL,
  juvLty = "dotted",
  juvLwd = 1,
  juvCol = "red",
  showJuv1 = TRUE,
  juvLine1 = -2,
  juvCex1 = 1,
  juvLabel1 = "juveniles_1 = ",
  showJuv2 = TRUE,
  juvLine2 = -4,
  juvCex2 = 1,
  juvLabel2 = "juveniles_2 = ",
  namesLine1 = -2,
  namesCex1 = 1,
  namesCol1 = NULL,
  showNames2 = FALSE,
  namesLine2 = -2,
  namesCex2 = 1,
  namesCol2 = NULL,
  juvAdj = 0.99,
  juvRound = 0,
  juvSide = 3,
  juvTextCol1 = NULL,
  juvTextCol2 = NULL,
  cex.axis = 1,
  cex.lab = 1,
  ylab_line = 3,
  namesAdj = 0.01,
  title_text = NULL,
  title_line = 2,
  title_cex = NULL,
  title_col = "black",
  title_font = 1,
  smooth = FALSE,
  oma = NULL,
  xlab = NULL,
  ylab = "Frecuencia (%)",
  noDataLabel = "Sin datos",
  ylabFactor = 1,
  relative = TRUE
)

Arguments

file1	Indicates the table from the main length distribution will be drawn. See details.
file2	Indicates the table from the secondary length distribution will be drawn. See details.
dataFactor	Factor that multiplies matrices 1 and 2.
newPlot	If TRUE, the plot will be opened in a new window (using x11 command).
profile	character. Indicates the profile (as an species' name) used to predine values of xlim, juvLine, xInterval and xlab.
xlim	Limits of x axis.
xInterval	Number of intervals for x axis labels.
ylim	Limits of y axis.
yInterval	Number of intervals for y axis labels.
ylimList	List of xlim value for each plot.
yIntervalList	List of yInterval value for each plot.
ltys1	lty (see par) parameter for main length distribution lines.
lwds1	lwd (see par) parameter for main length distribution lines.
col1	col (see par) parameter for main length distribution lines.
alpha1	factor modifying the opacity alpha (typically in [0,1]) for line 1.
ltys2	lty (see par) parameter for secondary length distribution lines.
lwds2	lwd (see par) parameter for secondary length distribution lines.
col2	col (see par) parameter for secondary length distribution lines.
alpha2	factor modifying the opacity alpha (typically in [0,1]) for line 2.
juvLimit	Limit length for juveniles.
juvLty	lty (see par) parameter for juvenile line.
juvLwd	lwd (see par) parameter for juvenile line.
juvCol	col (see par) parameter for juvenile line.
showJuv1	Do you want to show the percentage of juveniles 1 as text?
juvLine1	line (see mtext) parameter for juvenile 1 line.
juvCex1	Size for juveniles 1 text.
juvLabel1	Text before juvenile 1 value.
showJuv2	Do you want to show the percentage of juveniles 2 as text?
juvLine2	line (see mtext) parameter for juvenile 2 line.
juvCex2	Size for juveniles 2 text.
juvLabel2	Text before juvenile 2 value.
namesLine1	line (see mtext) parameter for text of category for file 1.
namesCex1	cex (see mtext) parameter for text of category for file 1.
namesCol1	col (see mtext) parameter for text of category for file 1.
showNames2	logical do you want to show the names of categories of file 2?
namesLine2	line (see mtext) parameter for text of category for file 2.
namesCex2	cex (see mtext) parameter for text of category for file 2.
namesCol2	col (see mtext) parameter for text of category for file 2.
juvAdj	adj (see mtext) parameter for juvenile text.
juvRound	Number of decimals places used to show juveniles' values.
juvSide	side (see mtext) parameter for juvenile text.
juvTextCol1	col (see mtext) parameter for text of juveniles for file 1.
juvTextCol2	col (see mtext) parameter for text of juveniles for file 2.
cex.axis	cex.axis (see par) parameter for x and y axes.
cex.lab	cex.lab (see par) parameter for x and y axes.
ylab_line	line (see mtext) parameter for ylab text.
namesAdj	adj (see mtext) parameter for categories (column names) text.
title_text	Text for title. If not NULL, default oma = c(5, 5, 3, 3)
title_line	line (see mtext) parameter for title text.
title_cex	Size for title text.
title_col	col (see par) parameter for title text.
title_font	font (see par) parameter for title text.
smooth	logical Do you want to smooth the length distribution lines?
oma	oma (see par) parameter for plot. Default c(5, 5, 1, 3).
xlab	Label for x axis.
ylab	Label for y axis.
noDataLabel	character. If there is no data in a column, the function will show what this parameter indicates.
ylabFactor	numeric. Value that multiplies all values in both main and secondary matrices.
relative	logical Do you want to plot relatives or absolutes values?

Details

This function takes a length frequency data and returns an stacking plot of that frequencies. smooth: logical. If TRUE, function uses an spline function to plot by categories. This function uses a data with categories at col and length at rows.

LuisLauM/ruisu documentation built on March 26, 2024, 8:23 a.m.