RemoveDyingErythroid: RemoveDyingErythroid Function removes dying cells and...

In LunFlaer/DTCFinder: Malignant cells finder

Description

RemoveDyingErythroid Function removes dying cells and erythroid cells

Usage

RemoveDyingErythroid(
  ExprMat,
  Signature = NULL,
  MinPct.MT = 0.2,
  MinPct.Erythroid = 0.2,
  MinPct.Signature = 0.002
)

Arguments

ExprMat	Expression matrix of genes X cells
Signature	Signature genes to define a cell type for removal (default NULL)
MinPct.MT	Minimal percentage of mitochondrial UMIs for a cell to be dying. default is 20%.
MinPct.Erythroid	Minimal percentage of erythroid UMIs for a cell to be an erythrocyte. default is 20%.
MinPct.Signature	Minimal percentage of signature UMIs for a cell to be a specific cell. default is 0.2%.

Value

an expression matrix after removing unwanted cells

Examples

RemoveDyingErythroid(data)

LunFlaer/DTCFinder documentation built on July 17, 2020, 4:26 a.m.