NGCHMDemoData: NGCHMDemoData

In MD-Anderson-Bioinformatics/NGCHMDemoData: Demo Data for the NGCHM R Package

NGCHMDemoData

Description

This package provides several relatively large datasets that can be used to demostrate the capabilities of the Next-Generation Clustered Heat Map (NG-CHM) system.

Details

The included data is a small subset of data from The Cancer Genome Atlas (TCGA) project. There are five data files from three groups of cancer samples:

• 200 breast cancer (BRCA) samples.

• 169 glioblastoma (GBM) samples.

• 547 additional glioblastoma (GBM) samples.

The two Glioblastoma groups were characterized using different technologies (RNASeq and microarrays, respectively).

Note: the NG-CHM system can work with data from any domain, not just biological data.

Note: the included data has been been preprocessed, subsetted, and manipulated in multiple, undocumented ways. It should only be used for evaluating and demonstrating the NG-CHM system and not for deriving any scientific conclusions.

The different data sets overlap with each other in several ways that are documented in the data sets concerned. These overlaps can be easily used to generate NG-CHMs that integrate multiple data sets in a variety of ways to further demonstrate the capabilities of NG-CHMs.

Installation

This package can be installed from MD Anderson Bioinformatics R-universe repository:

install.packages("NGCHMDemoData",
repos = c("https://md-anderson-bioinformatics.r-universe.dev", "https://cran.r-project.org"))

Author(s)

Maintainer: Mary A Rohrdanz [e-mail]

Authors:

• Bradley M Broom [e-mail] (ORCID)

Other contributors:

• Chris Wakefield [e-mail] [contributor]

• James Melott [e-mail] [contributor]

• MD Anderson Cancer Center [copyright holder]

See Also

TCGA.BRCA.Demo, TCGA.GBM.Demo, TCGA.GBM.EXPR

MD-Anderson-Bioinformatics/NGCHMDemoData documentation built on June 28, 2024, 11:37 p.m.