TCGA.GBM.ExpressionData: Glioblastoma Multiforme (GBM) RNASeq expression data from...

In MD-Anderson-Bioinformatics/NGCHMDemoData: Demo Data for the NGCHM R Package

Glioblastoma Multiforme (GBM) RNASeq expression data from TCGA

Description

Load using data('TCGA.GBM.Demo').

Format

A numeric data matrix with 3540 rows and 169 columns.

• Row labels are gene symbols (e.g. SYK). The NG-CHM label type is bio.gene.hugo.

• Column labels are TCGA barcodes up to the center field (28 characters total, e.g. TCGA-06-0178-01A-01R-1849-01). The NG-CHM label type is
  bio.tcga.barcode.sample.vial.portion.analyte.aliquot.

• Data has been log-transformed and row centered (min -6.373672, max 9.701261).

• This data set and TCGA.BRCA.ExpressionData have 1225 genes (rows) in common.

• See TCGA.GBM.EXPR for commonalities with that data set.

See Also

TCGA.GBM.Demo, TCGA.GBM.TP53MutationData, TCGA.GBM.EXPR

MD-Anderson-Bioinformatics/NGCHMDemoData documentation built on June 28, 2024, 11:37 p.m.