getOverlap: Overlap between genomic and exon coordinates
In MDegener/SpliceSelector: Filtering of Results from common Alternative Splicing Software
Description
Usage
Arguments
Value
Description
Compares supplied coordinates with coordinates from an exon annotation file (e.g. GENCODE .gtf)
Usage
1
getOverlap(grObject, exonAnnotation)
Arguments
grObject
GRanges object with genomic coordinates (see GenomicRanges documentation for more info)
exonAnnotation
annotation file filtered for exon coordinates (e.g. from GENCODE)
Value
Table listing all overlapping coordinates with their corresponding overlap type
MDegener/SpliceSelector documentation built on Dec. 31, 2020, 2:18 p.m.
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Description Usage Arguments Value
Description
Compares supplied coordinates with coordinates from an exon annotation file (e.g. GENCODE .gtf)
Usage
1 | getOverlap(grObject, exonAnnotation)
|
Arguments
grObject |
GRanges object with genomic coordinates (see GenomicRanges documentation for more info) |
exonAnnotation |
annotation file filtered for exon coordinates (e.g. from GENCODE) |
Value
Table listing all overlapping coordinates with their corresponding overlap type
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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