liftOverGRange: Wrapper function for UCSC's liftOver tool

In MDegener/SpliceSelector: Filtering of Results from common Alternative Splicing Software

Description

Converts coordinates in genomic range object from the given assembly to the target assembly

Usage

liftOverGRange(grObject, givenAssembly, targetAssembly, libPath)

Arguments

grObject	GRanges object with genomic coordinates (see GenomicRanges documentation for more info)
givenAssembly	genome assembly of the supplied coordinates (e.g. "hg19")
targetAssembly	genome assembly to which the coordinates will be converted
libPath	directory where the liftOver chain is stored (the chain will be downloaded if not already present in this directory)

Value

GRanges object with genomic coordinates after liftOver conversion

MDegener/SpliceSelector documentation built on Dec. 31, 2020, 2:18 p.m.