Man pages for MPCary/DEXICA
Functions for predicting and validating gene modules
| ann.partition | Wrapper function for ANN partitioning |
| ann.partition.model.1 | Data: ANN model for use in component partitioning |
| checkModules | Evaluate a set of modules using gene annotations |
| countJobs | Count the number of jobs defined in a DexBatch object |
| DexBatch-class | An S4 class for testing multiple compendia and/or parameters |
| dexFastICA | Run the fastICA algorithm without matrix preprocessing |
| fixed.partition | Wrapper function for fixed threshold partitioning |
| getAllParamSets | Get all parameter sets defined in a ParameterSet object |
| getOneParamSet | Get a single parameter set defined in a ParameterSet object |
| getParamSetCount | Get the number of parameter sets defined in a ParameterSet... |
| GPL200.50.mini | Data: A small compendium of _C. elegans_ microarray data |
| GPL200.GO.mini | Data: A binary matrix associating probesets with Gene... |
| ParameterSet-class | An S4 class for defining DexBatch parameter ranges |
| partition | Partition a component matrix |
| predictModules | Predict gene modules using ICA |
| preprocessMatrix | Preprocess a data matrix |
| reseedParamSets | Reset the random seeds in a ParameterSet object |
| runJob | Run a single job defined in a DexBatch object |
| splitMatrix | Split matrix |
