ann.partition | Wrapper function for ANN partitioning |
ann.partition.model.1 | Data: ANN model for use in component partitioning |
checkModules | Evaluate a set of modules using gene annotations |
countJobs | Count the number of jobs defined in a DexBatch object |
DexBatch-class | An S4 class for testing multiple compendia and/or parameters |
dexFastICA | Run the fastICA algorithm without matrix preprocessing |
fixed.partition | Wrapper function for fixed threshold partitioning |
getAllParamSets | Get all parameter sets defined in a ParameterSet object |
getOneParamSet | Get a single parameter set defined in a ParameterSet object |
getParamSetCount | Get the number of parameter sets defined in a ParameterSet... |
GPL200.50.mini | Data: A small compendium of _C. elegans_ microarray data |
GPL200.GO.mini | Data: A binary matrix associating probesets with Gene... |
ParameterSet-class | An S4 class for defining DexBatch parameter ranges |
partition | Partition a component matrix |
predictModules | Predict gene modules using ICA |
preprocessMatrix | Preprocess a data matrix |
reseedParamSets | Reset the random seeds in a ParameterSet object |
runJob | Run a single job defined in a DexBatch object |
splitMatrix | Split matrix |
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