CreateHeatmap: Create heatmaps on desired subsets of genes

In MUSC-CGM/PIMENTo: Microarray Analysis Pipeline

Description

Normalize input raw data using quantile and mloess methods. Plots of the normalized data along with a dendrogram clustering all samples will be stored in newly created pipeline directory.

Usage

CreateHeatmap(sig.genes.sam.obj, subsets.dir, file.format=c("geneid",
"symbol"))

Arguments

sig.genes.sam.obj	Object returned from call to SigGenesSAM
subsets.dir	Directory containing files of genes output from pathway analysis or simply genes of interest
file.format	Indicator of how genes are identified in each file, be it "geneid" or "symbol"

MUSC-CGM/PIMENTo documentation built on May 8, 2019, 3:24 p.m.