inst/scripts/batch-data.R
In MahShaaban/curatedAdipoArray: A Curated Microarrays Dataset of MDI-induced Differentiated Adipocytes (3T3-L1) Under Genetic and Pharmacological Perturbations
# load library
library(tidyverse)
library(Biobase)
library(sva)
source('inst/scripts/helper-functions.R')
# load data and remove batch
genetic <- read_rds('cleandata/genetic_perturbation.rds')
genetic2 <- remove_batch(genetic,
batch = paste0(genetic$gpl, genetic$series_id))
write_rds(genetic2, 'cleandata/genetic_perturbation2.rds')
pharma <- read_rds('cleandata/pharmacological_perturbation.rds')
pharma2 <- remove_batch(pharma,
batch = paste0(pharma$gpl, pharma$series_id))
write_rds(pharma2, 'cleandata/pharmacological_perturbation2.rds')
MahShaaban/curatedAdipoArray documentation built on Feb. 16, 2020, 2:30 a.m.
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# load library
library(tidyverse)
library(Biobase)
library(sva)
source('inst/scripts/helper-functions.R')
# load data and remove batch
genetic <- read_rds('cleandata/genetic_perturbation.rds')
genetic2 <- remove_batch(genetic,
batch = paste0(genetic$gpl, genetic$series_id))
write_rds(genetic2, 'cleandata/genetic_perturbation2.rds')
pharma <- read_rds('cleandata/pharmacological_perturbation.rds')
pharma2 <- remove_batch(pharma,
batch = paste0(pharma$gpl, pharma$series_id))
write_rds(pharma2, 'cleandata/pharmacological_perturbation2.rds')
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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