mirna_tidy: Tidy RTCGA.miRNASeq data.frame
In MahShaaban/sqlome: Build SQLite tables of microRNAs and Transcription Factors-gene Correlations
Description
Usage
Arguments
Value
Examples
Description
This is a custom function to tidy up the RTCGA.miRNASeq data.frames. The aim is to strip out unnessecary data
and get to a typical bioconductor expression matrix. To achieve that, the function drops unneeded columns and rows,
extract the patient bcr and microRNA miRBase IDs and add them to the transposed matrix as column and row names.
Usage
1
mirna_tidy(mirna)
Arguments
mirna
A RTCGA.miRNASeq data.frame
Value
A tidy expression matrix with microRNAs in the rows and patient samples in the columns.
Examples
1
2
3
library(RTCGA.miRNASeq)
rtcga.df <- ACC.miRNASeq
ACC.mat <- mirna_tidy(rtcga.df)
MahShaaban/sqlome documentation built on May 28, 2019, 1:46 p.m.
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Description Usage Arguments Value Examples
Description
This is a custom function to tidy up the RTCGA.miRNASeq data.frames. The aim is to strip out unnessecary data and get to a typical bioconductor expression matrix. To achieve that, the function drops unneeded columns and rows, extract the patient bcr and microRNA miRBase IDs and add them to the transposed matrix as column and row names.
Usage
1 | mirna_tidy(mirna)
|
Arguments
mirna |
A RTCGA.miRNASeq data.frame |
Value
A tidy expression matrix with microRNAs in the rows and patient samples in the columns.
Examples
1 2 3 | library(RTCGA.miRNASeq)
rtcga.df <- ACC.miRNASeq
ACC.mat <- mirna_tidy(rtcga.df)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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