rppa_tidy: Tidy RTCGA.RPPA data.frame

Description Usage Arguments Value Examples

Description

This is a custom function to tidy up the RTCGA.RPPA data.frames. The aim is to strip out unnessecary data and get to a typical bioconductor expression matrix. To achieve that, the function drops the first column, extract the patient bcr and antibody ID and add them to the transposed matrix as column and row names.

Usage

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rppa_tidy(rppa)

Arguments

rppa

A RTCGA.RPPA data.frame

Value

A tidy expression matrix with proteins in the rows and patient samples in the columns.

Examples

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library(RTCGA.RPPA)
rtcga.df <- ACC.RPPA
ACC.mat <- rppa_tidy(rtcga.df)

MahShaaban/sqlome documentation built on May 28, 2019, 1:46 p.m.