getNCBISeqID: Download unique identifiers by taxon for sequences on NCBI
In Maine-eDNA/abbagadabba: Amplicon-based biodiversity assessment, gap analysis, database building, and more!
getNCBISeqID R Documentation
Download unique identifiers by taxon for sequences on NCBI
Description
Download unique identifiers by taxon for sequences on NCBI
Usage
getNCBISeqID(spp)
Arguments
spp
vector of species names (should already be scrubbed)
Value
a data.frame with columns uid and gid that
record (respectively) the species ID and the sequence ID from NCBI
@examples
## Not run:
foo <- getNCBISeqID(c('Drosophila murphyi', 'Drosophila sproati'))
## End(Not run)
Maine-eDNA/abbagadabba documentation built on Sept. 3, 2022, 9:24 p.m.
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| getNCBISeqID | R Documentation |
Download unique identifiers by taxon for sequences on NCBI
Description
Download unique identifiers by taxon for sequences on NCBI
Usage
getNCBISeqID(spp)
Arguments
spp |
vector of species names (should already be scrubbed) |
Value
a data.frame with columns uid and gid that
record (respectively) the species ID and the sequence ID from NCBI
@examples ## Not run: foo <- getNCBISeqID(c('Drosophila murphyi', 'Drosophila sproati')) ## End(Not run)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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