getNCBITaxonomy: Download taxonomy (with error correcting) from NCBI
In Maine-eDNA/abbagadabba: Amplicon-based biodiversity assessment, gap analysis, database building, and more!
getNCBITaxonomy R Documentation
Download taxonomy (with error correcting) from NCBI
Description
Download taxonomy (with error correcting) from NCBI
Usage
getNCBITaxonomy(spp)
Arguments
spp
character vector of species names
Value
a data.frame with columns old_name, ncbi_name,
uid that record (respectively) the user-supplied name, the name
matched in NCBI, the species ID from NCBI
@examples
## Not run:
foo <- getNCBITaxonomy(c('Idiomyia sproati', 'Drosophil murphy', 'no body'))
## End(Not run)
Maine-eDNA/abbagadabba documentation built on Sept. 3, 2022, 9:24 p.m.
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| getNCBITaxonomy | R Documentation |
Download taxonomy (with error correcting) from NCBI
Description
Download taxonomy (with error correcting) from NCBI
Usage
getNCBITaxonomy(spp)
Arguments
spp |
character vector of species names |
Value
a data.frame with columns old_name, ncbi_name,
uid that record (respectively) the user-supplied name, the name
matched in NCBI, the species ID from NCBI
@examples ## Not run: foo <- getNCBITaxonomy(c('Idiomyia sproati', 'Drosophil murphy', 'no body')) ## End(Not run)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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