adj2mat | Convert adjacency list into an adjacency matrix. |
BioGRID.table | BioGRID gene interaction information |
calc.ldpois | Calculate the logarithm of Poisson probability mass function |
CRC.data | A RNA-Seq gene expression data set for colorectal cancer |
data1065 | Simulated RNA-Seq data |
dr.mat | Calculate the log likelihood using Gaussian quadrature method... |
estDE | Estimate Differential Expression states |
getTableAddressing | Get the adjacency list addressing template. |
neib1065 | Neighbourhood matrix for 1065 genes |
neibMat | Create the neighbourhood matrix |
pathDESeq-package | Pathway-Based Differential Expression Analysis for RNA-Seq... |
pgbEst | Poisson-Gamma-Beta model parameter estimation |
pgbmrfICM | Function to perform PGBMRF model |
Reactome24.Hs | Reactome pathway information for Homo sapiens |
Reactome6.Hs | Reactome pathway genes list for 6 selected Homo sapiens... |
Reactome.genes | Reactome pathway gene list |
state1065 | Simulated Differential Expression states for 1065 genes |
symmetricize | Make a matrix symmetric |
ttest | Perform two independent sample t test |
ur.mat | Calculate the log likelihood using Gaussian quadrature method... |
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