BioGRID.table: BioGRID gene interaction information

In MalathiSIDona/pathDESeq: Pathway-Based Differential Expression Analysis for RNA-Seq Data

Description

This data set contains a curated set of physical and genetic, gene interactions for Homo sapiens retrieved from BioGRID database version 3.4.129.

Usage

data("BioGRID.table")

Format

A data frame with 270,970 gene interactions on the following 2 variables.

Gene.1

Official gene symbol for interacting partner A

Gene.2

Official gene symbol for interacting partner B

Each row is a gene-gene interaction pair.

Source

BioGRID interaction database http://thebiogrid.org/download.php

References

Chatr-Aryamontri, A., Breitkreutz, B.J., Oughtred, R., Boucher, L., Heinicke, S., Chen, D., Stark, C., Breitkreutz, A., Kolas, N., O'Donnell, L., et al.(2015). The BioGRID interaction database: 2015 update. Nucleic Acids Res.43:D470-D478

Stark, C., Breitkreutz, B.J., Reguly, T., Boucher, L., Breitkreutz, A., Tyers, M. (2015). BioGRID: A General Repository for Interaction Datasets.Nucleic Acids Res.34:D535-9.

MalathiSIDona/pathDESeq documentation built on May 8, 2019, 3:37 p.m.