Description Usage Arguments Details Value Author(s) See Also
Find instances of de-novo Homer motifs in a GRanges using Homer's annotatePeaks.pl script.
1 | find_instances(pos_file, genome, output_dir = tempdir())
|
pos_file |
<#> (Genomic Ranges object) |
genome |
<#> (Installed Homer genome) or (path to FASTA) |
output_dir |
Path to output dir for Homer analysis. Defaults to tempdir() |
Must point to a Homer output directory to find a 'homerMotifs.all.motifs' file. Saves a the raw output file from annotatePeaks.pl as 'motifInstances.tab" in the same folder.
A tidy dataframe of instances of motifs.
Malte Thodberg
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