SimulateILISampCoalCounts: Simulate ILI, Sampling, and Coalescent counts

In Mamie/PILAF: PILAF: Phylodynamics InfLuenzA Forecast

Description

Simulate flu sampling, coalescence and ILI counts given effective population size trajectory and number of expected samples. Time is defined using present as 0.

Usage

SimulateILISampCoalCounts(lim, flu.Ne, flu.sampNum, ILI.sampNum,
  init.samp = 1, i = 1)

Arguments

lim	A numeric tuple of start (present) and end (past) times.
flu.Ne	A function of time (for flu effective popluation size).
flu.sampNum	A numeric scalar of expected number of flu samples in lim.
ILI.sampNum	A numeric scalar of expected number of sampling events.
i	An optional numeric scalar indicating iteration of simulation in lim

Value

A list containing coalescent, sampling and ILI counts

Mamie/PILAF documentation built on May 8, 2019, 8:53 p.m.