visualize_flu_season: Visualize the time series for each Flu Season

In Mamie/PILAF: PILAF: Phylodynamics InfLuenzA Forecast

Description

Plot the time series for each flu season (week 40 - week 21).

Usage

visualize_flu_season(..., time_series_names, datalist = NULL,
  subset_seasons = NULL, ncol = 1, no_y_axis = TRUE,
  season_label = T, title = NULL, scales = "fixed", log_y = T,
  error_band_names = NULL, correlate_ts = NULL, label_x = NULL,
  label_y = NULL, add_forecasts = NULL)

Arguments

time_series_names	The column name for the time series (same in length as data + datalist)
datalist	A list of data frame to plot multiple time series (alternative to data)
subset_seasons	Seasons to keep
ncol	Number of columns
no_y_axis	Whether to emove y axis label
season_label	Whether to remove season label
title	The title of the plot
scales	Parameter for facet_wrap ("free_x", "free_y", "fixed")
log_y	Whether to log y axis
error_band_names	A data frame that record the variable names for lower and upper bound
correlate_ts	A data frame containing three columns (time, week, time series) for annotation; must be in order
label_x	x coordinate of correlation annotation
label_y	y coordinate of correlation annotation
add_forecasts	A data frame containing the forecast values (output df from forecast_starting)
data	A data frame contain three columns (year, week, the time series); the column names for year and week must be "year" and "week"

Value

A ggplot object visualizing from week 40 to week 21

Mamie/PILAF documentation built on May 8, 2019, 8:53 p.m.