Man pages for Mamie/mwang
Collection of useful functions
| CITRUSRegression | CITRUS regression |
| ConstructAbundanceMatrix | Construct Abundance Matrix |
| DetachPkgs | Detach all Packages |
| ExportSubsetFCS | Export combinedFCS as FCS files |
| ExtractSheetNames | Extract Excel Sheet Names |
| GetParameters | Get FCS Channel Name and Description |
| PhenoGraphTSNE | Run Rtsne on Data Matrix |
| PlotAbundaceBoxplot | Plot Abundance Boxplot |
| PlotClusterMFI | Plot CITRUS Cluster MFI Heatmap |
| PlotDist | Plot Marker Distribution |
| PlotHierarchy | Plot CITRUS hierarchy |
| PlotMarkerDensity | Plot Marker Density |
| PlotRes | Plot Results of CITRUS regression |
| plot.RunLasso | Plot Lasso Coefficient Trace |
| PlotTSNE | Plot TSNE using ggplot2 |
| PrintLaTeXTable | Print LaTex Table |
| ProcessqPCRList | Process qPCR Data Frame List |
| ReadExcelSheet | Read Excel Sheets into a List |
| ReadFCS | Read an FCS file |
| ReadFCSSet | Read a set of FCS files for analysis |
| ReloadPkg | Reload Loaded Package |
| runCITRUS | Run CITRUS |
| RunLasso | Run Lasso Regression |
| RunPhenoGraph | Run PhenoGraph on a FCS File |
