RealData: Experimental time-series data used for testing

In ManchesterBioinference/DEtime: inferring the perturbation time from biological time course data

Experimental time-series data used for testing

Description

In this experiment, the aim is to study the transcriptional change occuring in Arabidopsis following inoculation with P. syringae pv. tomato DC3000 (PtoDC3000) versus the disarmed strain Pto DC3000hrpA. Two time series data are included: infection of Arabidopsis with virulent Pseudomonas syringage pv. tomato DC3000, which leads to disease developmen (perturbed condition 1) and infection of Arabidopsis with the disarmed strain DC3000hrpA (perturbed condition 2).

Format

A list which contains the time course data for 20 genes at time points [0, 2, 3, 4, 6, 7, 8, 10, 11, 12, 14, 16, 17.5] hrs with 4 replicates at each time point

Details

• ControlTimes Exprimental times for the perturbed condition 1

• ControlData Time series measurements for the perturbed condition 1

• PerturbedTimes Exprimental times for the perturbed condition 2

• PerturbedData Time series measurements for the perturbed condition 2

Examples

   data(RealData)

ManchesterBioinference/DEtime documentation built on Feb. 9, 2024, 12:10 p.m.