getcoexpr: Get IDs For Co-Expressed Genes from The 'LINC' Class

Description Usage Arguments Value Author(s) Examples

View source: R/LINC_FUNCTIONS.R

Description

getcoexpr provides access to co-expressed genes of a query in 'LINC' objects.

Usage

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getcoexpr(input,
          query   = NULL,
          keyType = NULL)

Arguments

input

a 'LINCcluster' or 'LINCsingle' object

query

for a 'LINCcluster' the name of the query gene

keyType

The 'keyType' (gene system) for the output.

Value

a vector containing the co-expressed genes for a query

Author(s)

Manuel Goepferich

Examples

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data(BRAIN_EXPR)
# Get the co-expressed genes for the query gene '55384' alias MEG3
getcoexpr(crbl_cluster, query = "55384")

# The co-expressed genes can also be returned as gene symbols.
getcoexpr(crbl_cluster, query = "55384", keyType = 'SYMBOL')

ManuelGoepferich/LINC documentation built on May 7, 2019, 2:46 p.m.