tests/testthat/test.plot3Dpoints.pcadata.R

In MarekSlenker/MorphoTools2: Multivariate Morphometric Analysis

context("plot3Dpoints.pcadata")

morphoDataFrame = data.frame("ID" = c("id1","id2","id3","id4","id5","id6","id7","id8"),
                             "Population" = c("Pop1", "Pop1", "Pop2", "Pop2", "Pop3", "Pop3", "Pop4", "Pop4"),
                             "Taxon" = c("TaxA", "TaxA", "TaxA", "TaxA", "TaxB", "TaxB", "TaxB", "TaxB"),
                               "Ch1" = c(1,3,4,6,1,7,12,8),
                               "Ch2" = c(11, 12,42,12,32,11,22,18))

morphoMockup = .morphodataFromDataFrame(morphoDataFrame)

# locally suppress warnings
data(centaurea)
centaurea = suppressWarnings(naMeanSubst(centaurea))
centaurea = removePopulation(centaurea, populationName = c("LIP", "PREL"))

pops=populOTU(centaurea)


test_that("ploting with error parameters",  {

  pcaRes = pca.calc(morphoMockup)

  expect_error(plot3Dpoints(pcaRes), "3D plot requires at least 3 axes. Object has 2 axes." )
})