getAllele2Drops: getAllele2Drops

In Mariamsp/brackconv: What the Package Does (One Line, Title Case)

getAllele2Drops

Description

Help function for checking Allele 2 drop-outs

Usage

getAllele2Drops(initial_df2, InputHb)

Arguments

initial_df2	Data frame with parental, stutter and allele sequences
InputHb	Minimum value of heterozygote balance

Details

In the first part we obtain the summary classification of the sequences into Allele 1 and Allele 2 (coded as 1 for the first and 2 for the second). In the second part we do a second analysis only of the allele 2 sequences. We check drop-outs of allele 2 due to removal of sequences because the Hb values falls out of the set threshold (inputHb)

Value

Two data frames: 1) data frame with possible Allele 2 drop-outs and 2) working data frame with new column for drop-outs

Author(s)

Maria Martin Agudo <maagud.at.ous-hf.no>

Mariamsp/brackconv documentation built on March 17, 2022, 5:14 p.m.