AtlasSampleMetadata: Sample metadata from the Pijuan-Sala et al. embryo atlas

In MarioniLab/MouseGastrulationData: Single-Cell -omics Data across Mouse Gastrulation and Early Organogenesis

Sample metadata from the Pijuan-Sala et al. embryo atlas

Description

A data frame containing stage and embryo pool information for the atlas dataset.

Usage

AtlasSampleMetadata

Format

A data frame containing information for each 10x sample of the embryo atlas. This object contains:

sample:

Integer, 10x sample index.

stage:

Character, developmental stage from which sample was generated.

pool_index:

Integer, index for pools of embryos; samples with the same values are from the same pool of dissociated cells.

seq_batch:

Integer, seqencing batch index; samples with the same values were multiplexed for sequencing.

ncells:

Integer, number of cells (post-QC) per sample.

Note that sample 11 is missing by design due to experimental failure: it is not available for download.

References

Pijuan-Sala B, Griffiths JA, Guibentif C et al. (2019). A single-cell molecular map of mouse gastrulation and early organogenesis. Nature 566, 7745:490-495.

Examples

head(AtlasSampleMetadata)

MarioniLab/MouseGastrulationData documentation built on Jan. 31, 2024, 11:01 a.m.