mosaicDataTopology: mosaicDataTopology
In MarioniLab/StabMap: Stabilised mosaic single cell data integration using unshared features
View source: R/mosaicDataTopology.R
mosaicDataTopology R Documentation
mosaicDataTopology
Description
Generate mosaic data topology network as an igraph object.
Usage
mosaicDataTopology(assay_list)
Arguments
assay_list
a list of data matrices with rownames (features) specified.
Value
igraph weighted network with nodes corresponding to
assay_list elements, and edges present if the matrices share at
least one rowname. Edge weights correspond to the number of shared
rownames among data matrices.
Examples
set.seed(2021)
assay_list = mockMosaicData()
mdt = mosaicDataTopology(assay_list)
mdt
plot(mdt)
MarioniLab/StabMap documentation built on Sept. 28, 2022, 2:28 a.m.
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View source: R/mosaicDataTopology.R
| mosaicDataTopology | R Documentation |
mosaicDataTopology
Description
Generate mosaic data topology network as an igraph object.
Usage
mosaicDataTopology(assay_list)
Arguments
assay_list |
a list of data matrices with rownames (features) specified. |
Value
igraph weighted network with nodes corresponding to
assay_list elements, and edges present if the matrices share at
least one rowname. Edge weights correspond to the number of shared
rownames among data matrices.
Examples
set.seed(2021) assay_list = mockMosaicData() mdt = mosaicDataTopology(assay_list) mdt plot(mdt)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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