mosaicDataUpSet: mosaicDataUpSet

In MarioniLab/StabMap: Stabilised mosaic single cell data integration using unshared features

mosaicDataUpSet

Description

Plots feature overlaps of mosaic data as an UpSet plot.

Usage

mosaicDataUpSet(assay_list, plot = FALSE, ...)

Arguments

assay_list	a list of data matrices with rownames (features) specified.
plot	logical (default FALSE) whether the UpSet plot should be printed.
...	further arguments passed to 'upset' from the 'UpSetR' package.

Value

UpSet object displaying degree of overlap of rownames (features) among each of the data matrices in assay_list. Set bars correspond to the number of cells/samples present in each data matrix.

Examples

set.seed(2021)
assay_list = mockMosaicData()
lapply(assay_list, dim)
mosaicDataUpSet(assay_list)

# additional arguments from UpSetR::upset()
mosaicDataUpSet(assay_list, empty.intersections = TRUE)

MarioniLab/StabMap documentation built on Sept. 28, 2022, 2:28 a.m.