API for MarioniLab/cydar
Using Mass Cytometry for Differential Abundance Analyses
| Global functions | |
|---|---|
| .check_cell_data | Source code |
| .chosen_markers | Source code |
| .col_warning | Source code |
| .computeCellWeights | Source code |
| .downsample | Source code |
| .downsample0 | Source code |
| .find_vertex | Source code |
| .generateDensity | Source code |
| .getECDF | Source code |
| .get_LR_bounds | Source code |
| .get_unused_markers | Source code |
| .get_used_markers | Source code |
| .interpolate_cols | Source code |
| .named_intensities | Source code |
| .named_unused_intensities | Source code |
| .obtainColours | Source code |
| .prepareDensity | Source code |
| .pullOutMarkers | Source code |
| .pull_out_data | Source code |
| .quantileDistr | Source code |
| .raw_cellAssignments | Source code |
| .raw_cellIntensities | Source code |
| .raw_cell_id | Source code |
| .raw_intensities | Source code |
| .raw_metadata | Source code |
| .raw_rowdata | Source code |
| .raw_sample_id | Source code |
| .raw_unusedIntensities | Source code |
| .rescaleDistr | Source code |
| .subsetToIndex | Source code |
| .transformDistr | Source code |
| CyData | Man page |
| CyData-class | Man page |
| [,CyData,ANY,ANY,ANY-method | Man page |
| [<-,CyData,ANY,ANY,CyData-method | Man page |
| cbind,CyData-method | Man page |
| cellAssignments | Man page Source code |
| cellInformation | Man page Source code |
| cellIntensities | Man page Source code |
| compute_density | Source code |
| countCells | Man page Source code |
| count_cells | Source code |
| createColorBar | Man page Source code |
| dnaGate | Man page Source code |
| drop_redundant | Source code |
| expandRadius | Man page Source code |
| findFirstSphere | Man page Source code |
| getCenterCell | Man page Source code |
| intensities | Man page Source code |
| intensityRanges | Man page Source code |
| interpretSpheres | Man page Source code |
| labelSpheres | Man page Source code |
| makeClosestTable | Source code |
| makeHistograms | Source code |
| makeHistoryTable | Source code |
| makeLabPlot | Source code |
| makeMetricTable | Source code |
| makeNavPlot | Source code |
| markernames | Man page |
| markernames,CyData-method | Man page |
| medIntensities | Man page Source code |
| median_int_by_sample | Source code |
| multiIntHist | Man page Source code |
| neighborDistances | Man page Source code |
| normalizeBatch | Man page Source code |
| outlierGate | Man page Source code |
| pickBestMarkers | Man page Source code |
| plotSphereIntensity | Man page Source code |
| plotSphereLogFC | Man page Source code |
| poolCells | Man page Source code |
| prepareCellData | Man page Source code |
| show,CyData-method | Man page |
| spatialFDR | Man page Source code |
| weighted_median_int | Source code |
