API for MarioniLab/cydar
Using Mass Cytometry for Differential Abundance Analyses

Global functions
.check_cell_data Source code
.chosen_markers Source code
.col_warning Source code
.computeCellWeights Source code
.downsample Source code
.find_vertex Source code
.generateDensity Source code
.getECDF Source code
.get_LR_bounds Source code
.interpolate_cols Source code
.obtainColours Source code
.prepareDensity Source code
.pullOutMarkers Source code
.pull_out_data Source code
.quantileDistr Source code
.raw_cellAssignments Source code
.raw_cellIntensities Source code
.raw_cell_id Source code
.raw_intensities Source code
.raw_metadata Source code
.raw_precomputed Source code
.raw_rowdata Source code
.raw_sample_id Source code
.raw_unusedIntensities Source code
.rescaleDistr Source code
.subsetToIndex Source code
.transformDistr Source code
CyData-class Man page
[,CyData,ANY,ANY,ANY-method Man page
[,CyData,ANY,ANY-method Man page
[,CyData,ANY-method Man page
[<-,CyData,ANY,ANY,CyData-method Man page
cbind,CyData-method Man page
cellAssignments Man page
cellAssignments,CyData-method Man page
cellInformation Man page Source code
cellIntensities Man page Source code
countCells Man page Source code
createColorBar Man page Source code
dnaGate Man page Source code
expandRadius Man page Source code
findFirstSphere Man page Source code
getCenterCell Man page Source code
intensities Man page
intensities,CyData-method Man page
intensityRanges Man page Source code
interpretSpheres Man page Source code
labelSpheres Man page Source code
makeClosestTable Source code
makeHistograms Source code
makeHistoryTable Source code
makeLabPlot Source code
makeMetricTable Source code
makeNavPlot Source code
markernames Man page
markernames,CyData-method Man page
medIntensities Man page Source code
multiIntHist Man page Source code
neighborDistances Man page Source code
normalizeBatch Man page Source code
outlierGate Man page Source code
pickBestMarkers Man page Source code
plotSphereIntensity Man page Source code
plotSphereLogFC Man page Source code
poolCells Man page Source code
prepareCellData Man page Source code
scat Source code
show,CyData-method Man page
spatialFDR Man page Source code
MarioniLab/cydar documentation built on Nov. 6, 2019, 2:44 p.m.