Files in MarioniLab/cydar
Using Mass Cytometry for Differential Abundance Analyses
DESCRIPTION
NAMESPACE
R/CyData.R
R/RcppExports.R
R/countCells.R
R/createColorBar.R
R/expandRadius.R
R/findFirstSphere.R
R/gates.R
R/intensityRanges.R
R/interpretSpheres.R
R/labelSpheres.R
R/medIntensities.R
R/multiIntHist.R
R/namespace.R
R/neighborDistances.R
R/normalizeBatch.R
R/pickBestMarkers.R
R/plotSphereIntensity.R
R/plotSphereLogFC.R
R/poolCells.R
R/prepareCellData.R
R/spatialFDR.R
R/utils.R
README.md
inst/CITATION
inst/NEWS.Rd
man/CyData.Rd
man/countCells.Rd
man/createColorBar.Rd
man/dnaGate.Rd
man/expandRadius.Rd
man/findFirstSphere.Rd
man/intensityRanges.Rd
man/interpretSpheres.Rd
man/labelSpheres.Rd
man/medIntensities.Rd
man/multiIntHist.Rd
man/neighborDistances.Rd
man/normalizeBatch.Rd
man/outlierGate.Rd
man/pickBestMarkers.Rd
man/plotSphereIntensity.Rd
man/plotSphereLogFC.Rd
man/poolCells.Rd
man/prepareCellData.Rd
man/spatialFDR.Rd
src/RcppExports.cpp
src/compute_density.cpp
src/count_cells.cpp
src/drop_redundant.cpp
src/median_int_by_sample.cpp
src/weighted_median_int.cpp
tests/testthat.R
tests/testthat/test-class.R
tests/testthat/test-counts.R
tests/testthat/test-dist.R
tests/testthat/test-expand.R
tests/testthat/test-first.R
tests/testthat/test-label.R
tests/testthat/test-medint.R
tests/testthat/test-norm.R
tests/testthat/test-plot.R
tests/testthat/test-prep.R
tests/testthat/test-spatial.R
vignettes/cydar.Rmd
