plot_umaps_w_counts: plot_umaps_w_counts
In MarioniLab/geneBasisR: What the Package Does (One Line, Title Case)
View source: R/visualization_functions.R
plot_umaps_w_counts R Documentation
plot_umaps_w_counts
Description
plot_umaps_w_counts
Usage
plot_umaps_w_counts(sce, genes, size = 0.25, ncol = NULL)
Arguments
sce
SingleCellExperiment object containing gene counts matrix (stored in 'logcounts' assay). Should contain field 'UMAP' in reducedDim slot, colnames = x and y.
genes
Character vector containing gene names for which to plot UMAPs.
size
Size of dots for geom_point
ncol
Positive integer specifying number of columns for ggarrange
Value
For each gene: scater plot with UMAP-coordinates colored by gene expression
MarioniLab/geneBasisR documentation built on June 30, 2023, 2:04 p.m.
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View source: R/visualization_functions.R
| plot_umaps_w_counts | R Documentation |
plot_umaps_w_counts
Description
plot_umaps_w_counts
Usage
plot_umaps_w_counts(sce, genes, size = 0.25, ncol = NULL)
Arguments
sce |
SingleCellExperiment object containing gene counts matrix (stored in 'logcounts' assay). Should contain field 'UMAP' in reducedDim slot, colnames = x and y. |
genes |
Character vector containing gene names for which to plot UMAPs. |
size |
Size of dots for geom_point |
ncol |
Positive integer specifying number of columns for ggarrange |
Value
For each gene: scater plot with UMAP-coordinates colored by gene expression
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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