sce_mouseEmbryo: MouseEmbryo, E8.5 Counts matrix for mouse embryo, E8.5 (data...
In MarioniLab/geneBasisR: What the Package Does (One Line, Title Case)
sce_mouseEmbryo R Documentation
MouseEmbryo, E8.5
Counts matrix for mouse embryo, E8.5 (data extracted from Pijuan-Sala et al., 2019).
Description
SCE object with log-normalised counts matrix (pre-calculated with custom script) strored in assay logcounts.
colData contains information about sample (i.e. batch), celltype and provided color-code for celltypes.
reducedDim contains UMAP coordinates.
Counts matrix is already pre-processed and only non-mitochondrial genes with variance > 0 are retained (top 3000 to reduce memory usage and computational time).
Usage
data(sce_mouseEmbryo)
Format
SCE object
Source
MouseGastrulationData package
MarioniLab/geneBasisR documentation built on June 30, 2023, 2:04 p.m.
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| sce_mouseEmbryo | R Documentation |
MouseEmbryo, E8.5 Counts matrix for mouse embryo, E8.5 (data extracted from Pijuan-Sala et al., 2019).
Description
SCE object with log-normalised counts matrix (pre-calculated with custom script) strored in assay logcounts. colData contains information about sample (i.e. batch), celltype and provided color-code for celltypes. reducedDim contains UMAP coordinates. Counts matrix is already pre-processed and only non-mitochondrial genes with variance > 0 are retained (top 3000 to reduce memory usage and computational time).
Usage
data(sce_mouseEmbryo)
Format
SCE object
Source
MouseGastrulationData package
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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